Variant report

Variant	rs7269539
Chromosome Location	chr20:15675270-15675271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10485538	0.81[ASN][1000 genomes]
rs10485539	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12625717	0.82[AFR][1000 genomes]
rs6034258	0.82[EUR][1000 genomes]
rs6034259	0.82[EUR][1000 genomes]
rs6034263	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6034266	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6034267	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6034270	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6043438	0.82[EUR][1000 genomes]
rs6043451	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6043455	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6043458	0.86[ASN][1000 genomes]
rs6043462	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6043464	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6043465	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6043470	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6110742	0.99[AFR][1000 genomes]
rs6110746	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6110747	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6514600	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7269188	0.86[ASN][1000 genomes]
rs73614424	0.81[ASN][1000 genomes]
rs73614426	0.83[ASN][1000 genomes]
rs73614427	0.81[ASN][1000 genomes]
rs73614433	0.86[ASN][1000 genomes]
rs73614434	0.86[ASN][1000 genomes]
rs73614435	0.87[ASN][1000 genomes]
rs73614436	0.80[ASN][1000 genomes]
rs73614442	0.87[ASN][1000 genomes]
rs73614443	0.87[ASN][1000 genomes]
rs73614444	0.87[ASN][1000 genomes]
rs73614447	0.86[ASN][1000 genomes]
rs73614449	0.86[ASN][1000 genomes]
rs73614451	0.86[ASN][1000 genomes]
rs8118174	0.86[ASN][1000 genomes]
rs8118398	0.86[ASN][1000 genomes]
rs8118408	0.87[ASN][1000 genomes]
rs8119565	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15673800-15680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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