Variant report

Variant	rs7269188
Chromosome Location	chr20:15680489-15680490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10485538	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10485539	0.87[ASN][1000 genomes]
rs6034266	0.87[ASN][1000 genomes]
rs6034267	0.87[ASN][1000 genomes]
rs6043458	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043462	0.85[ASN][1000 genomes]
rs6043470	0.87[ASN][1000 genomes]
rs6514600	0.87[ASN][1000 genomes]
rs7269539	0.86[ASN][1000 genomes]
rs73614424	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73614425	0.91[ASN][1000 genomes]
rs73614426	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73614427	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73614433	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614434	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614435	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73614436	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73614442	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73614443	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73614444	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73614447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614452	0.92[ASN][1000 genomes]
rs8118174	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8118398	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8118408	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8119565	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15680000-15681800	Flanking Active TSS	HMEC	breast
2	chr20:15680000-15681800	Flanking Active TSS	NHEK	skin
3	chr20:15680000-15692400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:15680200-15680600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:15680200-15681000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr20:15680200-15681600	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr20:15680400-15680800	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr20:15680400-15680800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr20:15680400-15680800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr20:15680400-15680800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr20:15680400-15681200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr20:15680400-15681200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr20:15680400-15681200	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr20:15680400-15681200	Enhancers	Esophagus	oesophagus
15	chr20:15680400-15681200	Flanking Active TSS	Placenta	Placenta
16	chr20:15680400-15681400	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr20:15680400-15681400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr20:15680400-15681400	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links