Variant report
| Variant | rs73614436 |
|---|---|
| Chromosome Location | chrX:33757427-33757428 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10485538 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6043458 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7269188 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7269539 | 0.80[ASN][1000 genomes] |
| rs73614424 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73614425 | 0.83[ASN][1000 genomes] |
| rs73614426 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73614427 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73614433 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73614434 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73614435 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73614442 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73614443 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73614444 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73614447 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73614449 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73614451 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73614452 | 0.84[ASN][1000 genomes] |
| rs8118174 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs8118398 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs8118408 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8119565 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932521 | chrX:32947000-33798879 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv432295 | chrX:33158109-34158023 | Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2752322 | chrX:33605225-34358075 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv3392604 | chrX:33644563-33845254 | Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:33756200-33759600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 2 | chrX:33756400-33759600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
