Variant report

Variant	rs10485538
Chromosome Location	chr20:15662574-15662575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10485539	0.80[CHD][hapmap];0.82[ASN][1000 genomes]
rs16996387	0.94[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs6034260	0.83[CHB][hapmap];0.81[CHD][hapmap]
rs6034266	0.82[ASN][1000 genomes]
rs6034267	0.82[ASN][1000 genomes]
rs6043447	0.81[CHD][hapmap]
rs6043448	0.81[CHD][hapmap]
rs6043458	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6043462	0.80[ASN][1000 genomes]
rs6043470	0.82[ASN][1000 genomes]
rs6514600	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs7269188	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7269539	0.81[ASN][1000 genomes]
rs73614424	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614425	0.97[ASN][1000 genomes]
rs73614426	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73614427	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73614433	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73614434	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73614435	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73614436	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73614442	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73614443	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73614444	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73614447	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73614449	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73614451	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73614452	0.89[ASN][1000 genomes]
rs8118174	0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8118398	0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8118408	0.94[CHB][hapmap];0.90[CHD][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8119565	0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8125672	0.94[CHB][hapmap];0.93[CHD][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15657000-15663200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr20:15657400-15662800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:15657800-15663000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:15661200-15664800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:15662200-15664000	Enhancers	Muscle Satellite Cultured Cells	--

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