Variant report

Variant	rs6043447
Chromosome Location	chr20:15671890-15671891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10485538	0.81[CHD][hapmap];0.82[ASN][1000 genomes]
rs10485539	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12625717	0.85[YRI][hapmap]
rs16996387	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs6034258	0.81[EUR][1000 genomes]
rs6034259	0.83[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs6034260	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs6034263	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6034266	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034267	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034268	0.95[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap]
rs6034270	0.95[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6043438	0.83[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs6043442	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs6043443	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs6043448	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6043449	0.87[LWK][hapmap];0.83[MKK][hapmap];0.80[EUR][1000 genomes]
rs6043451	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6043455	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6043458	0.87[ASN][1000 genomes]
rs6043462	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6043464	0.95[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6043465	0.95[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6043470	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6105454	1.00[CEU][hapmap]
rs6110742	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6110746	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6110747	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6110751	0.83[CEU][hapmap]
rs6514600	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7261305	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs7263789	0.83[CEU][hapmap];0.80[GIH][hapmap];0.87[TSI][hapmap]
rs7269188	0.87[ASN][1000 genomes]
rs7269539	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73614424	0.82[ASN][1000 genomes]
rs73614426	0.82[ASN][1000 genomes]
rs73614433	0.87[ASN][1000 genomes]
rs73614434	0.87[ASN][1000 genomes]
rs73614435	0.86[ASN][1000 genomes]
rs73614442	0.86[ASN][1000 genomes]
rs73614443	0.86[ASN][1000 genomes]
rs73614444	0.86[ASN][1000 genomes]
rs73614447	0.87[ASN][1000 genomes]
rs73614449	0.87[ASN][1000 genomes]
rs73614451	0.87[ASN][1000 genomes]
rs73614452	0.80[ASN][1000 genomes]
rs8118174	0.87[ASN][1000 genomes]
rs8118398	0.82[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs8118408	0.82[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs8119565	0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs8125672	0.82[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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