Variant report

Variant	rs6110747
Chromosome Location	chr20:15680352-15680353
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10485539	0.90[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6034258	0.80[EUR][1000 genomes]
rs6034259	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs6034260	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs6034263	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6034266	0.95[CEU][hapmap];0.89[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6034267	0.85[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6034268	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6034270	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6043438	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs6043442	0.82[CEU][hapmap]
rs6043443	0.82[CEU][hapmap]
rs6043447	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs6043448	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap]
rs6043451	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6043455	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043462	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6043464	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6043465	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6043470	0.95[CEU][hapmap];0.89[CHB][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6105454	1.00[CEU][hapmap]
rs6110746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6110751	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs6514600	0.95[CEU][hapmap];0.88[CHB][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7261305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7263789	0.82[CEU][hapmap]
rs7269539	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8123014	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15679800-15680400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr20:15680000-15680400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr20:15680000-15680400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:15680000-15681800	Flanking Active TSS	HMEC	breast
5	chr20:15680000-15681800	Flanking Active TSS	NHEK	skin
6	chr20:15680000-15692400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr20:15680200-15680400	Enhancers	Placenta	Placenta
8	chr20:15680200-15680600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr20:15680200-15681000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:15680200-15681600	Active TSS	HUES6 Cell Line	embryonic stem cell

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