Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs6034258	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6034259	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6034260	0.83[CEU][hapmap]
rs6034263	0.81[EUR][1000 genomes]
rs6034266	0.81[EUR][1000 genomes]
rs6034267	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs6034270	0.81[EUR][1000 genomes]
rs6043438	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6043440	0.93[JPT][hapmap]
rs6043442	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6043443	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6043447	0.83[CEU][hapmap]
rs6043448	0.83[CEU][hapmap]
rs6043462	0.81[EUR][1000 genomes]
rs6043472	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6105454	0.81[CEU][hapmap]
rs6110746	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6110747	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs6110752	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6110754	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6514600	0.81[EUR][1000 genomes]
rs7261305	0.83[CEU][hapmap]
rs7263789	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs8122835	0.81[EUR][1000 genomes]
rs8123014	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15680000-15692400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:15682400-15684800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr20:15682600-15684800	Enhancers	HMEC	breast
4	chr20:15683000-15685400	Enhancers	NHEK	skin
5	chr20:15683200-15684800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr20:15683200-15685400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:15683400-15684600	Enhancers	HSMM	muscle
8	chr20:15683400-15684600	Enhancers	Osteobl	bone
9	chr20:15683600-15684400	Enhancers	NH-A	brain
10	chr20:15683600-15684600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:15683600-15684800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr20:15683600-15685000	Enhancers	Hela-S3	cervix
13	chr20:15683600-15685400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr20:15683600-15688200	Enhancers	HUVEC	blood vessel
15	chr20:15683800-15684600	Enhancers	NHDF-Ad	bronchial
16	chr20:15683800-15684600	Enhancers	NHLF	lung

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