Variant report

Variant	rs6043472
Chromosome Location	chr20:15687866-15687867
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10485539	0.82[TSI][hapmap]
rs6034258	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6034259	0.87[CEU][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6034267	0.80[CEU][hapmap]
rs6043438	0.87[CEU][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6043442	0.87[CEU][hapmap];0.93[GIH][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap]
rs6043443	0.87[CEU][hapmap];0.93[GIH][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap]
rs6110751	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6110752	0.91[CEU][hapmap];0.89[MEX][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6110754	0.91[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7263789	0.87[CEU][hapmap];0.90[GIH][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap]
rs8122835	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8123014	0.91[CEU][hapmap];0.89[MEX][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6043472	LOC152217	trans	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15680000-15692400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:15683600-15688200	Enhancers	HUVEC	blood vessel
3	chr20:15687000-15688000	Enhancers	NHEK	skin
4	chr20:15687400-15688000	Enhancers	HMEC	breast
5	chr20:15687600-15688000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr20:15687800-15688000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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