Variant report

Variant	rs6044077
Chromosome Location	chr20:16510522-16510523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:16509254..16510909-chr20:16552638..16555438,3	MCF-7	breast:
2	chr20:16509254..16511285-chr20:16547385..16550108,3	MCF-7	breast:
3	chr20:16510014..16512437-chr20:16553741..16556375,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089177	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1071913	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2092695	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2223906	0.82[EUR][1000 genomes]
rs4814507	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4814508	0.84[ASN][1000 genomes]
rs6034522	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6034523	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6034524	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6044084	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6044087	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6044089	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6044092	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6044094	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6044097	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6044102	0.84[EUR][1000 genomes]
rs6044103	0.84[EUR][1000 genomes]
rs6044106	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6044110	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6135795	0.84[ASN][1000 genomes]
rs6514689	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6044077	KIF16B	cis	Thyroid	GTEx

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16472800-16517400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr20:16485800-16521200	Weak transcription	Right Ventricle	heart
3	chr20:16489000-16511000	Weak transcription	Colonic Mucosa	Colon
4	chr20:16489200-16512200	Weak transcription	Gastric	stomach
5	chr20:16489200-16521000	Weak transcription	Spleen	Spleen
6	chr20:16489400-16510800	Weak transcription	Lung	lung
7	chr20:16489400-16517600	Weak transcription	Pancreas	Pancrea
8	chr20:16491800-16511000	Weak transcription	Esophagus	oesophagus
9	chr20:16492400-16517800	Weak transcription	Colon Smooth Muscle	Colon
10	chr20:16492600-16528800	Weak transcription	Primary B cells from cord blood	blood
11	chr20:16493000-16521200	Weak transcription	Liver	Liver
12	chr20:16493600-16516200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr20:16497600-16521600	Weak transcription	Brain Hippocampus Middle	brain
14	chr20:16501400-16511800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr20:16506200-16517800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr20:16506400-16517400	Weak transcription	Adipose Nuclei	Adipose
17	chr20:16507400-16527000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr20:16507600-16511000	Enhancers	Fetal Intestine Large	intestine
19	chr20:16507800-16511000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr20:16507800-16511400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr20:16507800-16512000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr20:16507800-16513800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr20:16508000-16510800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr20:16508000-16511800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr20:16508000-16522000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr20:16508200-16511600	Enhancers	Stomach Mucosa	stomach
27	chr20:16508200-16512200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr20:16508400-16511600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr20:16508400-16512400	Enhancers	Fetal Intestine Small	intestine
30	chr20:16508400-16513000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr20:16508600-16511000	Enhancers	Duodenum Mucosa	Duodenum
33	chr20:16508800-16510600	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr20:16508800-16511000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr20:16509000-16510800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr20:16509000-16517400	Weak transcription	Left Ventricle	heart
37	chr20:16509000-16522000	Weak transcription	Aorta	Aorta
38	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
39	chr20:16509400-16510600	Weak transcription	HSMMtube	muscle
40	chr20:16509400-16510800	Weak transcription	HepG2	liver
41	chr20:16509400-16511000	Weak transcription	NHLF	lung
42	chr20:16509400-16517400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr20:16509600-16510600	Enhancers	A549	lung
44	chr20:16509600-16510600	Weak transcription	NH-A	brain
45	chr20:16509600-16510800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr20:16509600-16510800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr20:16509600-16510800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr20:16509600-16510800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr20:16509600-16510800	Weak transcription	Ovary	ovary
50	chr20:16509600-16510800	Weak transcription	HSMM	muscle

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