Variant report

Variant	rs6034524
Chromosome Location	chr20:16522928-16522929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16522138..16524979-chr20:16553506..16555034,2	MCF-7	breast:
2	chr20:15421139..15421682-chr20:16522882..16523464,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089177	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1004895	0.84[JPT][hapmap]
rs1071913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16997837	0.85[JPT][hapmap]
rs1997902	0.85[JPT][hapmap]
rs2092695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143986	0.85[JPT][hapmap]
rs2223906	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4814507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4814508	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6034522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044077	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6044080	0.84[JPT][hapmap]
rs6044084	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6044087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044088	0.85[JPT][hapmap]
rs6044089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs6044092	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6044094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044095	0.85[JPT][hapmap]
rs6044097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044098	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044100	0.84[JPT][hapmap]
rs6044102	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044104	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044106	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6044113	0.85[JPT][hapmap]
rs6075070	0.84[JPT][hapmap]
rs6111174	0.84[JPT][hapmap]
rs6111177	0.84[JPT][hapmap]
rs6135794	0.85[JPT][hapmap]
rs6135795	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6514689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6034524	KIF16B	cis	Thyroid	GTEx

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16492600-16528800	Weak transcription	Primary B cells from cord blood	blood
2	chr20:16507400-16527000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
5	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
6	chr20:16517800-16534200	Weak transcription	Esophagus	oesophagus
7	chr20:16518200-16523200	Weak transcription	Small Intestine	intestine
8	chr20:16518200-16535800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr20:16518800-16534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr20:16520200-16532000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr20:16520200-16534400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr20:16520400-16523200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr20:16520400-16533800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr20:16520400-16534800	Weak transcription	Fetal Intestine Small	intestine
15	chr20:16520800-16523200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr20:16520800-16523400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr20:16520800-16523800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr20:16521000-16523800	Enhancers	Ovary	ovary
19	chr20:16521200-16523400	Enhancers	Psoas Muscle	Psoas
20	chr20:16521400-16523400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr20:16521600-16523400	Enhancers	Brain Hippocampus Middle	brain
22	chr20:16521600-16523400	Enhancers	Left Ventricle	heart
23	chr20:16521800-16523400	Enhancers	Pancreas	Pancrea
24	chr20:16522000-16523000	Enhancers	Brain Anterior Caudate	brain
25	chr20:16522000-16523000	Enhancers	Brain Cingulate Gyrus	brain
26	chr20:16522200-16524600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr20:16522200-16533400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr20:16522600-16523200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr20:16522600-16523400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr20:16522600-16527800	Weak transcription	Brain Angular Gyrus	brain
31	chr20:16522600-16528200	Weak transcription	Lung	lung
32	chr20:16522800-16524400	Weak transcription	Adipose Nuclei	Adipose
33	chr20:16522800-16524800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr20:16522800-16528400	Weak transcription	Spleen	Spleen
35	chr20:16522800-16532400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr20:16522800-16533800	Weak transcription	Right Ventricle	heart
37	chr20:16522800-16536800	Weak transcription	Aorta	Aorta

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