Variant report

Variant	rs6044080
Chromosome Location	chr20:16513260-16513261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1004895	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1071913	0.84[JPT][hapmap]
rs16997837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1997902	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2092695	0.84[JPT][hapmap]
rs2092696	0.98[ASN][1000 genomes]
rs2143986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2143987	0.90[ASN][1000 genomes]
rs4440028	0.97[ASN][1000 genomes]
rs4814506	0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs4814507	0.84[JPT][hapmap]
rs4814508	0.84[JPT][hapmap]
rs6034522	0.84[JPT][hapmap]
rs6034523	0.84[JPT][hapmap]
rs6034524	0.84[JPT][hapmap]
rs6034531	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs6044082	0.88[ASN][1000 genomes]
rs6044087	0.84[JPT][hapmap]
rs6044088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6044089	0.84[JPT][hapmap]
rs6044090	0.83[JPT][hapmap]
rs6044094	0.84[JPT][hapmap]
rs6044095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6044096	0.96[ASN][1000 genomes]
rs6044097	0.84[JPT][hapmap]
rs6044098	0.84[JPT][hapmap]
rs6044100	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6044102	0.84[JPT][hapmap]
rs6044110	0.84[JPT][hapmap]
rs6044113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6075070	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6111174	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6111177	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6135791	0.94[ASN][1000 genomes]
rs6135794	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6135795	0.84[JPT][hapmap]
rs6514689	0.84[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6044080	C20orf23	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16472800-16517400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr20:16485800-16521200	Weak transcription	Right Ventricle	heart
3	chr20:16489200-16521000	Weak transcription	Spleen	Spleen
4	chr20:16489400-16517600	Weak transcription	Pancreas	Pancrea
5	chr20:16492400-16517800	Weak transcription	Colon Smooth Muscle	Colon
6	chr20:16492600-16528800	Weak transcription	Primary B cells from cord blood	blood
7	chr20:16493000-16521200	Weak transcription	Liver	Liver
8	chr20:16493600-16516200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr20:16497600-16521600	Weak transcription	Brain Hippocampus Middle	brain
10	chr20:16506200-16517800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr20:16506400-16517400	Weak transcription	Adipose Nuclei	Adipose
12	chr20:16507400-16527000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr20:16507800-16513800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr20:16508000-16522000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr20:16509000-16517400	Weak transcription	Left Ventricle	heart
17	chr20:16509000-16522000	Weak transcription	Aorta	Aorta
18	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
19	chr20:16509400-16517400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr20:16509600-16521600	Weak transcription	Fetal Muscle Leg	muscle
21	chr20:16509800-16517400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr20:16510400-16517400	Weak transcription	Small Intestine	intestine
23	chr20:16511200-16518400	Weak transcription	NHEK	skin
24	chr20:16511400-16518600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr20:16511400-16519600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr20:16511400-16519800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr20:16511600-16517600	Weak transcription	Stomach Mucosa	stomach
28	chr20:16511600-16522400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
30	chr20:16511800-16513400	Weak transcription	Fetal Intestine Large	intestine
31	chr20:16511800-16517400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr20:16511800-16518000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr20:16512200-16514000	Enhancers	Psoas Muscle	Psoas
34	chr20:16512200-16514200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr20:16512200-16517600	Weak transcription	Ovary	ovary
36	chr20:16512400-16513400	Weak transcription	Fetal Intestine Small	intestine
37	chr20:16512400-16513400	Enhancers	A549	lung
38	chr20:16512400-16517400	Weak transcription	Esophagus	oesophagus
39	chr20:16513000-16513600	Enhancers	Sigmoid Colon	Sigmoid Colon

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