Variant report

Variant	rs6135791
Chromosome Location	chr20:16531020-16531021
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1004895	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16997837	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1997902	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2092696	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2143986	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2143987	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4440028	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4814506	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6034531	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6034532	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6044080	0.94[ASN][1000 genomes]
rs6044082	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6044088	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6044095	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6044096	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6044100	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6044113	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6075070	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6111174	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6111177	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6135794	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6135791	KIF16B	cis	Thyroid	GTEx
rs6135791	C20orf23	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
3	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
4	chr20:16517800-16534200	Weak transcription	Esophagus	oesophagus
5	chr20:16518200-16535800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr20:16518800-16534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:16520200-16532000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr20:16520200-16534400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:16520400-16533800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr20:16520400-16534800	Weak transcription	Fetal Intestine Small	intestine
11	chr20:16522200-16533400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr20:16522800-16532400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr20:16522800-16533800	Weak transcription	Right Ventricle	heart
14	chr20:16522800-16536800	Weak transcription	Aorta	Aorta
15	chr20:16523000-16533800	Weak transcription	Brain Anterior Caudate	brain
16	chr20:16523400-16532600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr20:16523400-16535400	Weak transcription	Left Ventricle	heart
18	chr20:16523800-16532400	Weak transcription	Ovary	ovary
19	chr20:16524000-16533800	Weak transcription	Small Intestine	intestine
20	chr20:16525600-16532000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr20:16528400-16532400	Weak transcription	Brain Angular Gyrus	brain
22	chr20:16528600-16532400	Weak transcription	Psoas Muscle	Psoas
23	chr20:16528600-16534400	Weak transcription	Gastric	stomach
24	chr20:16529000-16533800	Weak transcription	Spleen	Spleen
25	chr20:16529200-16532000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr20:16529200-16532600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr20:16529200-16534400	Weak transcription	Pancreas	Pancrea
28	chr20:16529400-16532400	Weak transcription	Lung	lung
29	chr20:16529400-16534000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr20:16530200-16536400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr20:16530400-16536400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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