Variant report

Variant	rs6135794
Chromosome Location	chr20:16534808-16534809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1004895	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1071913	0.85[JPT][hapmap]
rs16997837	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1997902	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2092695	0.85[JPT][hapmap]
rs2092696	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2143986	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2143987	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4440028	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4814506	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4814507	0.84[JPT][hapmap]
rs4814508	0.85[JPT][hapmap]
rs6034522	0.85[JPT][hapmap]
rs6034523	0.84[JPT][hapmap]
rs6034524	0.85[JPT][hapmap]
rs6034531	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6034532	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6044080	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6044082	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6044087	0.85[JPT][hapmap]
rs6044088	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6044089	0.85[JPT][hapmap]
rs6044090	0.85[JPT][hapmap]
rs6044094	0.84[JPT][hapmap]
rs6044095	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6044096	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6044097	0.85[JPT][hapmap]
rs6044098	0.84[JPT][hapmap]
rs6044100	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6044102	0.84[JPT][hapmap]
rs6044110	0.85[JPT][hapmap]
rs6044113	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6075070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6111174	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6111177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6135791	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6135795	0.84[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs6514689	0.84[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6135794	KIF16B	cis	Whole Blood	GTEx

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
3	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
4	chr20:16518200-16535800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr20:16522800-16536800	Weak transcription	Aorta	Aorta
6	chr20:16523400-16535400	Weak transcription	Left Ventricle	heart
7	chr20:16530200-16536400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr20:16530400-16536400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr20:16532600-16535400	Weak transcription	Right Atrium	heart
10	chr20:16533000-16535000	Weak transcription	Psoas Muscle	Psoas
11	chr20:16533000-16535200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr20:16533000-16536000	Weak transcription	Fetal Kidney	kidney
13	chr20:16533200-16535200	Weak transcription	Fetal Muscle Leg	muscle
14	chr20:16533200-16536600	Weak transcription	Ovary	ovary
15	chr20:16533400-16535800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr20:16533600-16536000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr20:16533800-16535000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr20:16533800-16535200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr20:16533800-16536000	Enhancers	Right Ventricle	heart
20	chr20:16533800-16537600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr20:16533800-16538400	Enhancers	NHEK	skin
22	chr20:16534000-16536000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr20:16534000-16536000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr20:16534200-16535400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr20:16534200-16536800	Weak transcription	Small Intestine	intestine
26	chr20:16534200-16537600	Enhancers	Adipose Nuclei	Adipose
27	chr20:16534200-16537600	Enhancers	Esophagus	oesophagus
28	chr20:16534200-16538200	Weak transcription	Brain Anterior Caudate	brain
29	chr20:16534400-16535000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr20:16534400-16535000	Weak transcription	Colon Smooth Muscle	Colon
31	chr20:16534400-16535000	Enhancers	Pancreas	Pancrea
32	chr20:16534400-16535400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr20:16534400-16535400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr20:16534400-16535800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr20:16534400-16535800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr20:16534400-16535800	Enhancers	Gastric	stomach
37	chr20:16534400-16536200	Enhancers	Lung	lung
38	chr20:16534600-16535200	Weak transcription	Spleen	Spleen
39	chr20:16534600-16535800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr20:16534600-16536000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr20:16534600-16538400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr20:16534600-16553600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr20:16534800-16535000	Enhancers	Stomach Mucosa	stomach
44	chr20:16534800-16535200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr20:16534800-16535600	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr20:16534800-16535800	Weak transcription	HMEC	breast
47	chr20:16534800-16536200	Weak transcription	Brain Hippocampus Middle	brain
48	chr20:16534800-16536600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr20:16534800-16537400	Weak transcription	Brain Substantia Nigra	brain

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