Variant report
Variant | rs2143987 |
---|---|
Chromosome Location | chr20:16534554-16534555 |
allele | A/G |
Outlinks | Ensembl   UCSC |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:16508400-16536800 | Weak transcription | Stomach Smooth Muscle | stomach |
2 | chr20:16509200-16553000 | Weak transcription | Primary T cells from cord blood | blood |
3 | chr20:16511600-16549000 | Weak transcription | Colonic Mucosa | Colon |
4 | chr20:16518200-16535800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
5 | chr20:16520400-16534800 | Weak transcription | Fetal Intestine Small | intestine |
6 | chr20:16522800-16536800 | Weak transcription | Aorta | Aorta |
7 | chr20:16523400-16535400 | Weak transcription | Left Ventricle | heart |
8 | chr20:16530200-16536400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
9 | chr20:16530400-16536400 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
10 | chr20:16532600-16535400 | Weak transcription | Right Atrium | heart |
11 | chr20:16533000-16535000 | Weak transcription | Psoas Muscle | Psoas |
12 | chr20:16533000-16535200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
13 | chr20:16533000-16536000 | Weak transcription | Fetal Kidney | kidney |
14 | chr20:16533200-16535200 | Weak transcription | Fetal Muscle Leg | muscle |
15 | chr20:16533200-16536600 | Weak transcription | Ovary | ovary |
16 | chr20:16533400-16534800 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
17 | chr20:16533400-16535800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
18 | chr20:16533600-16536000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
19 | chr20:16533800-16534600 | Enhancers | Spleen | Spleen |
20 | chr20:16533800-16535000 | Enhancers | Foreskin Melanocyte Primary Cells skin01 | Skin |
21 | chr20:16533800-16535200 | Enhancers | Skeletal Muscle Male | skeletal muscle |
22 | chr20:16533800-16536000 | Enhancers | Right Ventricle | heart |
23 | chr20:16533800-16537600 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
24 | chr20:16533800-16538400 | Enhancers | NHEK | skin |
25 | chr20:16534000-16534600 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
26 | chr20:16534000-16534800 | Enhancers | Brain Substantia Nigra | brain |
27 | chr20:16534000-16534800 | Enhancers | Sigmoid Colon | Sigmoid Colon |
28 | chr20:16534000-16534800 | Enhancers | HepG2 | liver |
29 | chr20:16534000-16536000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
30 | chr20:16534000-16536000 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
31 | chr20:16534200-16534600 | Enhancers | Brain Angular Gyrus | brain |
32 | chr20:16534200-16534600 | Enhancers | Brain Cingulate Gyrus | brain |
33 | chr20:16534200-16535400 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
34 | chr20:16534200-16536800 | Weak transcription | Small Intestine | intestine |
35 | chr20:16534200-16537600 | Enhancers | Adipose Nuclei | Adipose |
36 | chr20:16534200-16537600 | Enhancers | Esophagus | oesophagus |
37 | chr20:16534200-16538200 | Weak transcription | Brain Anterior Caudate | brain |
38 | chr20:16534400-16534600 | Genic enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
39 | chr20:16534400-16534600 | Enhancers | Duodenum Smooth Muscle | Duodenum |
40 | chr20:16534400-16534800 | ZNF genes & repeats | H9 Cell Line | embryonic stem cell |
41 | chr20:16534400-16534800 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
42 | chr20:16534400-16534800 | Enhancers | Brain Hippocampus Middle | brain |
43 | chr20:16534400-16534800 | Enhancers | HMEC | breast |
44 | chr20:16534400-16535000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
45 | chr20:16534400-16535000 | Weak transcription | Colon Smooth Muscle | Colon |
46 | chr20:16534400-16535000 | Enhancers | Pancreas | Pancrea |
47 | chr20:16534400-16535400 | Enhancers | Brain Dorsolateral Prefrontal Cortex | brain |
48 | chr20:16534400-16535400 | Enhancers | Skeletal Muscle Female | skeletal muscle |
49 | chr20:16534400-16535800 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
50 | chr20:16534400-16535800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |