Variant report

Variant	rs1071913
Chromosome Location	chr20:16519757-16519758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16515294..16517012-chr20:16519128..16521331,2	K562	blood:
2	chr20:16517798..16520614-chr20:16552938..16555340,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089177	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1004895	0.84[JPT][hapmap]
rs16997837	0.85[JPT][hapmap]
rs1997902	0.85[JPT][hapmap]
rs2092695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143986	0.85[JPT][hapmap]
rs2223906	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4814507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4814508	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6034522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044077	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6044080	0.84[JPT][hapmap]
rs6044084	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6044087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044088	0.85[JPT][hapmap]
rs6044089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6044092	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6044094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044095	0.85[JPT][hapmap]
rs6044097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044098	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044100	0.84[JPT][hapmap]
rs6044102	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044103	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044104	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6044106	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6044113	0.85[JPT][hapmap]
rs6075070	0.84[JPT][hapmap]
rs6111174	0.84[JPT][hapmap]
rs6111177	0.84[JPT][hapmap]
rs6135794	0.85[JPT][hapmap]
rs6135795	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6514689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1071913	KIF16B	cis	Thyroid	GTEx

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16485800-16521200	Weak transcription	Right Ventricle	heart
2	chr20:16489200-16521000	Weak transcription	Spleen	Spleen
3	chr20:16492600-16528800	Weak transcription	Primary B cells from cord blood	blood
4	chr20:16493000-16521200	Weak transcription	Liver	Liver
5	chr20:16497600-16521600	Weak transcription	Brain Hippocampus Middle	brain
6	chr20:16507400-16527000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr20:16508000-16522000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr20:16509000-16522000	Weak transcription	Aorta	Aorta
10	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
11	chr20:16509600-16521600	Weak transcription	Fetal Muscle Leg	muscle
12	chr20:16511400-16519800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr20:16511600-16522400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
15	chr20:16514400-16522000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr20:16516600-16520000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr20:16517400-16520200	Enhancers	Adipose Nuclei	Adipose
18	chr20:16517400-16521000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr20:16517800-16521200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr20:16517800-16534200	Weak transcription	Esophagus	oesophagus
21	chr20:16518000-16521000	Weak transcription	Ovary	ovary
22	chr20:16518200-16519800	Weak transcription	HepG2	liver
23	chr20:16518200-16521400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr20:16518200-16521600	Weak transcription	Left Ventricle	heart
25	chr20:16518200-16523200	Weak transcription	Small Intestine	intestine
26	chr20:16518200-16535800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr20:16518400-16521200	Weak transcription	Right Atrium	heart
28	chr20:16518400-16521600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr20:16518600-16521200	Weak transcription	Pancreas	Pancrea
30	chr20:16518600-16521200	Weak transcription	Psoas Muscle	Psoas
31	chr20:16518800-16520400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr20:16518800-16534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr20:16519000-16522000	Weak transcription	Lung	lung
34	chr20:16519200-16520000	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr20:16519400-16520000	Enhancers	Fetal Intestine Large	intestine
36	chr20:16519400-16520400	Enhancers	Fetal Intestine Small	intestine
37	chr20:16519400-16520600	Enhancers	Duodenum Mucosa	Duodenum
38	chr20:16519600-16519800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr20:16519600-16520000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr20:16519600-16520000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr20:16519600-16520000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr20:16519600-16520400	Enhancers	Stomach Mucosa	stomach

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