Variant report

Variant	rs60452039
Chromosome Location	chr3:139881090-139881091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16849961	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16849965	1.00[AMR][1000 genomes]
rs16849989	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56865323	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56910077	1.00[AMR][1000 genomes]
rs58668644	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59327241	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60537808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61547225	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868734	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868736	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868739	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868740	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868761	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868777	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139867400-139890000	Weak transcription	HSMMtube	muscle
2	chr3:139877000-139901200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:139879400-139881400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:139879800-139883600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:139879800-139883800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:139880200-139886400	Weak transcription	NHDF-Ad	bronchial
7	chr3:139881000-139881600	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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