Variant report

Variant	rs16849965
Chromosome Location	chr3:139862844-139862845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16849957	1.00[MEX][hapmap]
rs16849961	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16849989	1.00[AMR][1000 genomes]
rs16849992	1.00[MEX][hapmap]
rs56865323	1.00[AMR][1000 genomes]
rs56910077	1.00[AMR][1000 genomes]
rs58668644	1.00[AMR][1000 genomes]
rs59327241	1.00[AMR][1000 genomes]
rs60452039	1.00[AMR][1000 genomes]
rs60537808	1.00[AMR][1000 genomes]
rs61547225	1.00[AMR][1000 genomes]
rs6439901	1.00[MEX][hapmap]
rs73868734	1.00[AMR][1000 genomes]
rs73868736	1.00[AMR][1000 genomes]
rs73868739	1.00[AMR][1000 genomes]
rs73868740	1.00[AMR][1000 genomes]
rs73868761	1.00[AMR][1000 genomes]
rs73868777	1.00[AMR][1000 genomes]
rs7617224	1.00[MEX][hapmap]
rs922565	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139861200-139863000	Enhancers	Fetal Brain Male	brain
2	chr3:139862200-139863000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:139862200-139863000	Enhancers	Brain Cingulate Gyrus	brain
4	chr3:139862200-139863200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:139862400-139863000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:139862400-139863000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:139862400-139863000	Enhancers	Brain Hippocampus Middle	brain
8	chr3:139862600-139863000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:139862600-139865400	Weak transcription	Brain Germinal Matrix	brain
10	chr3:139862800-139863000	Strong transcription	HSMMtube	muscle
11	chr3:139862800-139865400	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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