Variant report

Variant	rs61547225
Chromosome Location	chr3:139865152-139865153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16849961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16849965	1.00[AMR][1000 genomes]
rs16849989	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56865323	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56910077	1.00[AMR][1000 genomes]
rs58668644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59327241	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60452039	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60537808	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868734	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868739	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868761	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868777	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139862600-139865400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:139862800-139865400	Weak transcription	Fetal Brain Female	brain
3	chr3:139863000-139865800	Weak transcription	HSMMtube	muscle
4	chr3:139864200-139865800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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