Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139847504..139850290-chr3:139855996..139858958,2	MCF-7	breast:
2	chr3:139856881..139858741-chr3:139866185..139867749,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12494072	1.00[CHB][hapmap]
rs16849961	1.00[MEX][hapmap];0.83[YRI][hapmap]
rs16849965	1.00[MEX][hapmap]
rs16849992	1.00[MEX][hapmap]
rs4428137	1.00[CHB][hapmap]
rs4462908	1.00[CHB][hapmap]
rs56009777	1.00[ASN][1000 genomes]
rs56047746	1.00[ASN][1000 genomes]
rs56910077	1.00[ASN][1000 genomes]
rs58796461	1.00[ASN][1000 genomes]
rs59850626	1.00[ASN][1000 genomes]
rs6439896	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6439901	1.00[MEX][hapmap]
rs6767558	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6767879	1.00[ASN][1000 genomes]
rs6799894	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6807785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs72986148	1.00[ASN][1000 genomes]
rs72986195	1.00[ASN][1000 genomes]
rs73868789	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7617224	1.00[MEX][hapmap]
rs7645419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs922565	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139835800-139862800	Weak transcription	HSMMtube	muscle

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