Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12634879	0.87[ASW][hapmap];0.82[CEU][hapmap];0.89[JPT][hapmap]
rs1317898	0.82[CEU][hapmap]
rs1320260	0.82[CEU][hapmap]
rs16849957	1.00[CHB][hapmap]
rs2350508	0.82[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs2882369	0.82[CEU][hapmap]
rs4317058	0.87[ASW][hapmap];0.82[CEU][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap]
rs4428137	1.00[CHB][hapmap]
rs4462908	1.00[CHB][hapmap]
rs4683481	0.82[CEU][hapmap]
rs4683808	0.82[CEU][hapmap]
rs6439896	1.00[CHB][hapmap]
rs6439899	0.88[JPT][hapmap]
rs6767558	1.00[CHB][hapmap]
rs6799894	1.00[CHB][hapmap]
rs6807785	1.00[CHB][hapmap]
rs7355921	0.82[JPT][hapmap]
rs7645419	1.00[CHB][hapmap]
rs9283594	0.82[CEU][hapmap]
rs939189	0.87[ASW][hapmap];0.82[CEU][hapmap];0.89[JPT][hapmap]
rs939190	0.82[CEU][hapmap]
rs9818488	0.82[CEU][hapmap]
rs9822943	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs9823483	0.82[CEU][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap]
rs9835717	0.82[CEU][hapmap]
rs9862768	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs9868890	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs9878323	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs9990262	0.87[ASW][hapmap];0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12494072	XRN1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139862600-139865400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:139862800-139865400	Weak transcription	Fetal Brain Female	brain
3	chr3:139863000-139864200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:139863000-139864200	Weak transcription	Fetal Brain Male	brain
5	chr3:139863000-139864400	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:139863000-139865800	Weak transcription	HSMMtube	muscle

Quick Search: