Variant report

Variant	rs6439896
Chromosome Location	chr3:139864353-139864354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139864319..139866124-chr3:139869946..139872757,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11921489	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12494072	1.00[CHB][hapmap]
rs16849957	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4428137	1.00[CHB][hapmap]
rs4462908	1.00[CHB][hapmap]
rs56009777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56047746	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56820920	1.00[EUR][1000 genomes]
rs56910077	1.00[ASN][1000 genomes]
rs58371048	1.00[EUR][1000 genomes]
rs58796461	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59203053	1.00[EUR][1000 genomes]
rs59850626	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60374612	1.00[EUR][1000 genomes]
rs6767558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767879	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776629	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6791775	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6799894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72986148	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72986195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73868737	1.00[EUR][1000 genomes]
rs73868743	1.00[EUR][1000 genomes]
rs73868744	1.00[EUR][1000 genomes]
rs73868745	1.00[EUR][1000 genomes]
rs73868750	1.00[EUR][1000 genomes]
rs73868754	1.00[EUR][1000 genomes]
rs73868756	1.00[EUR][1000 genomes]
rs73868757	1.00[EUR][1000 genomes]
rs73868758	1.00[EUR][1000 genomes]
rs73868780	1.00[EUR][1000 genomes]
rs73868790	1.00[EUR][1000 genomes]
rs73868794	0.87[EUR][1000 genomes]
rs73868795	1.00[EUR][1000 genomes]
rs73868796	1.00[EUR][1000 genomes]
rs7610998	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7629111	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7645419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139862600-139865400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:139862800-139865400	Weak transcription	Fetal Brain Female	brain
3	chr3:139863000-139864400	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:139863000-139865800	Weak transcription	HSMMtube	muscle
5	chr3:139864200-139865000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:139864200-139865800	Enhancers	Fetal Brain Male	brain

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