Variant report
| Variant | rs58371048 |
|---|---|
| Chromosome Location | chr3:139859780-139859781 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11921489 | 1.00[EUR][1000 genomes] |
| rs56009777 | 1.00[EUR][1000 genomes] |
| rs56047746 | 1.00[EUR][1000 genomes] |
| rs56820920 | 1.00[EUR][1000 genomes] |
| rs58796461 | 1.00[EUR][1000 genomes] |
| rs59203053 | 1.00[EUR][1000 genomes] |
| rs59850626 | 1.00[EUR][1000 genomes] |
| rs60374612 | 1.00[EUR][1000 genomes] |
| rs6439896 | 1.00[EUR][1000 genomes] |
| rs6767558 | 1.00[EUR][1000 genomes] |
| rs6767879 | 1.00[EUR][1000 genomes] |
| rs6776629 | 1.00[EUR][1000 genomes] |
| rs6791775 | 1.00[EUR][1000 genomes] |
| rs6799894 | 1.00[EUR][1000 genomes] |
| rs6807785 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72986148 | 1.00[EUR][1000 genomes] |
| rs72986195 | 1.00[EUR][1000 genomes] |
| rs73868737 | 1.00[EUR][1000 genomes] |
| rs73868743 | 1.00[EUR][1000 genomes] |
| rs73868744 | 1.00[EUR][1000 genomes] |
| rs73868745 | 1.00[EUR][1000 genomes] |
| rs73868750 | 1.00[EUR][1000 genomes] |
| rs73868754 | 1.00[EUR][1000 genomes] |
| rs73868756 | 1.00[EUR][1000 genomes] |
| rs73868757 | 1.00[EUR][1000 genomes] |
| rs73868758 | 1.00[EUR][1000 genomes] |
| rs73868780 | 1.00[EUR][1000 genomes] |
| rs73868790 | 1.00[EUR][1000 genomes] |
| rs73868794 | 0.87[EUR][1000 genomes] |
| rs73868795 | 1.00[EUR][1000 genomes] |
| rs73868796 | 1.00[EUR][1000 genomes] |
| rs7610998 | 1.00[EUR][1000 genomes] |
| rs7629111 | 1.00[EUR][1000 genomes] |
| rs7645419 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998423 | chr3:139526446-139947336 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv829739 | chr3:139797496-140002685 | Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:139835800-139862800 | Weak transcription | HSMMtube | muscle |
