Variant report

Variant	rs73868780
Chromosome Location	chr3:139870054-139870055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139869492..139871513-chr3:139873237..139875753,2	MCF-7	breast:
2	chr3:139864319..139866124-chr3:139869946..139872757,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11921489	1.00[EUR][1000 genomes]
rs56009777	1.00[EUR][1000 genomes]
rs56047746	1.00[EUR][1000 genomes]
rs56820920	1.00[EUR][1000 genomes]
rs58371048	1.00[EUR][1000 genomes]
rs58796461	1.00[EUR][1000 genomes]
rs59203053	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59850626	1.00[EUR][1000 genomes]
rs60374612	1.00[EUR][1000 genomes]
rs6439896	1.00[EUR][1000 genomes]
rs6767558	1.00[EUR][1000 genomes]
rs6767879	1.00[EUR][1000 genomes]
rs6776629	1.00[EUR][1000 genomes]
rs6791775	1.00[EUR][1000 genomes]
rs6799894	1.00[EUR][1000 genomes]
rs6807785	1.00[EUR][1000 genomes]
rs72986148	1.00[EUR][1000 genomes]
rs72986195	1.00[EUR][1000 genomes]
rs73868737	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73868743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73868744	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73868745	1.00[EUR][1000 genomes]
rs73868750	1.00[EUR][1000 genomes]
rs73868754	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73868756	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73868757	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73868758	1.00[EUR][1000 genomes]
rs73868790	1.00[EUR][1000 genomes]
rs73868794	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73868795	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73868796	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7610998	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7629111	1.00[EUR][1000 genomes]
rs7645419	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139866000-139874400	Weak transcription	Ovary	ovary
2	chr3:139867400-139890000	Weak transcription	HSMMtube	muscle
3	chr3:139870000-139870200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links