Variant report

Variant	rs56009777
Chromosome Location	chr3:139873680-139873681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11921489	1.00[EUR][1000 genomes]
rs16849957	1.00[ASN][1000 genomes]
rs56047746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56820920	1.00[EUR][1000 genomes]
rs56910077	1.00[ASN][1000 genomes]
rs58371048	1.00[EUR][1000 genomes]
rs58796461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59203053	1.00[EUR][1000 genomes]
rs59850626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60374612	1.00[EUR][1000 genomes]
rs6439896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767879	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776629	1.00[EUR][1000 genomes]
rs6791775	1.00[EUR][1000 genomes]
rs6799894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72986148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72986195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73868737	1.00[EUR][1000 genomes]
rs73868743	1.00[EUR][1000 genomes]
rs73868744	1.00[EUR][1000 genomes]
rs73868745	1.00[EUR][1000 genomes]
rs73868750	1.00[EUR][1000 genomes]
rs73868754	1.00[EUR][1000 genomes]
rs73868756	1.00[EUR][1000 genomes]
rs73868757	1.00[EUR][1000 genomes]
rs73868758	1.00[EUR][1000 genomes]
rs73868780	1.00[EUR][1000 genomes]
rs73868790	1.00[EUR][1000 genomes]
rs73868794	0.87[EUR][1000 genomes]
rs73868795	1.00[EUR][1000 genomes]
rs73868796	1.00[EUR][1000 genomes]
rs7610998	1.00[EUR][1000 genomes]
rs7629111	1.00[EUR][1000 genomes]
rs7645419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139866000-139874400	Weak transcription	Ovary	ovary
2	chr3:139867400-139890000	Weak transcription	HSMMtube	muscle
3	chr3:139873400-139873800	Weak transcription	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links