Variant report

Variant	rs60466904
Chromosome Location	chr1:56428964-56428965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59641326	0.86[AFR][1000 genomes]
rs74075204	0.86[AFR][1000 genomes]
rs74075209	0.86[AFR][1000 genomes]
rs74075217	0.86[AFR][1000 genomes]
rs74075221	0.86[AFR][1000 genomes]
rs74075222	0.86[AFR][1000 genomes]
rs74075224	0.86[AFR][1000 genomes]
rs74075225	0.86[AFR][1000 genomes]
rs74075226	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56425800-56441000	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:56426800-56432800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:56427000-56431000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:56427200-56434000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56427600-56430400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:56428600-56429000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:56428800-56429200	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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