Variant report

Variant	rs74075224
Chromosome Location	chr1:56456382-56456383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56248222	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58180102	1.00[AMR][1000 genomes]
rs59073332	1.00[AMR][1000 genomes]
rs59121815	1.00[AMR][1000 genomes]
rs59641326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59741771	1.00[AMR][1000 genomes]
rs60466904	0.86[AFR][1000 genomes]
rs61213965	1.00[AMR][1000 genomes]
rs6588604	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6689869	1.00[AMR][1000 genomes]
rs74072808	1.00[AMR][1000 genomes]
rs74072853	1.00[AMR][1000 genomes]
rs74075204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075233	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075234	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56451400-56457800	Enhancers	Fetal Lung	lung
2	chr1:56451800-56456400	Weak transcription	Placenta	Placenta
3	chr1:56452800-56457200	Enhancers	Ovary	ovary
4	chr1:56453400-56457000	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:56453800-56456800	Weak transcription	Aorta	Aorta
6	chr1:56454200-56459000	Weak transcription	Osteobl	bone
7	chr1:56454400-56456800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:56454600-56459200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:56454600-56459600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:56455200-56456400	Enhancers	Brain Substantia Nigra	brain
11	chr1:56455200-56456600	Enhancers	Psoas Muscle	Psoas
12	chr1:56455200-56456600	Enhancers	Right Atrium	heart
13	chr1:56455200-56456800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr1:56455200-56457200	Enhancers	NHDF-Ad	bronchial
15	chr1:56455400-56456400	Weak transcription	Fetal Stomach	stomach
16	chr1:56456000-56456600	Enhancers	HSMMtube	muscle
17	chr1:56456000-56457000	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:56456200-56459200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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