Variant report

Variant	rs59121815
Chromosome Location	chr1:56550666-56550667
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs4927301	0.83[AFR][1000 genomes]
rs56248222	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56394331	1.00[AMR][1000 genomes]
rs58180102	1.00[AMR][1000 genomes]
rs59073332	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59641326	1.00[AMR][1000 genomes]
rs59741771	1.00[AMR][1000 genomes]
rs61213965	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6588604	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6689869	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072853	1.00[AMR][1000 genomes]
rs74072892	1.00[AMR][1000 genomes]
rs74072896	1.00[AMR][1000 genomes]
rs74075204	1.00[AMR][1000 genomes]
rs74075209	1.00[AMR][1000 genomes]
rs74075217	1.00[AMR][1000 genomes]
rs74075221	1.00[AMR][1000 genomes]
rs74075222	1.00[AMR][1000 genomes]
rs74075224	1.00[AMR][1000 genomes]
rs74075225	1.00[AMR][1000 genomes]
rs74075226	1.00[AMR][1000 genomes]
rs74075233	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075234	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56548800-56558600	Weak transcription	NHDF-Ad	bronchial
2	chr1:56550200-56552600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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