Variant report

Variant	rs74075222
Chromosome Location	chr1:56451005-56451006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56248222	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58180102	1.00[AMR][1000 genomes]
rs59073332	1.00[AMR][1000 genomes]
rs59121815	1.00[AMR][1000 genomes]
rs59641326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59741771	1.00[AMR][1000 genomes]
rs60466904	0.86[AFR][1000 genomes]
rs61213965	1.00[AMR][1000 genomes]
rs6588604	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6689869	1.00[AMR][1000 genomes]
rs74072808	1.00[AMR][1000 genomes]
rs74072853	1.00[AMR][1000 genomes]
rs74075204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075233	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075234	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56440000-56451400	Weak transcription	Ovary	ovary
2	chr1:56447200-56452400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:56447400-56453200	Weak transcription	NHDF-Ad	bronchial
4	chr1:56447800-56451400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56447800-56451400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:56447800-56451400	Weak transcription	Fetal Lung	lung
7	chr1:56447800-56451800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:56448400-56453200	Weak transcription	Psoas Muscle	Psoas
9	chr1:56449200-56452400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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