Variant report

Variant	rs60471614
Chromosome Location	chr6:30092119-30092120
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17187826	1.00[ASN][1000 genomes]
rs17187847	1.00[ASN][1000 genomes]
rs17187917	0.88[EUR][1000 genomes]
rs17194258	1.00[ASN][1000 genomes]
rs17194293	0.88[EUR][1000 genomes]
rs17194363	0.88[EUR][1000 genomes]
rs56908820	1.00[ASN][1000 genomes]
rs59795345	0.84[EUR][1000 genomes]
rs61043470	0.88[EUR][1000 genomes]
rs6906435	1.00[ASN][1000 genomes]
rs6917420	1.00[ASN][1000 genomes]
rs7740741	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884056	chr6:30089623-30097818	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30086200-30092600	Enhancers	Fetal Intestine Small	intestine
2	chr6:30089000-30092600	Enhancers	Fetal Intestine Large	intestine
3	chr6:30089200-30092400	Enhancers	Hela-S3	cervix
4	chr6:30089400-30092400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:30089400-30092600	Enhancers	Duodenum Mucosa	Duodenum
6	chr6:30091000-30092400	Enhancers	HepG2	liver
7	chr6:30091400-30092200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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