Variant report

Variant	rs60483181
Chromosome Location	chr11:19097737-19097738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10741758	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10766526	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10766527	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11024979	0.98[EUR][1000 genomes]
rs11024980	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11024981	0.98[EUR][1000 genomes]
rs11024984	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12223197	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16936098	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221350	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61380789	0.98[EUR][1000 genomes]
rs868337	0.90[ASN][1000 genomes]
rs962317	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9633838	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv897030	chr11:19049478-19106045	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19093400-19098200	Weak transcription	HUVEC	blood vessel
2	chr11:19093400-19098800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:19093600-19098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:19095200-19101000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:19095200-19101000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:19095200-19104000	Weak transcription	Esophagus	oesophagus
7	chr11:19095800-19098200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:19095800-19098800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:19096200-19098200	Weak transcription	Gastric	stomach
10	chr11:19096200-19098400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:19096200-19101000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:19096200-19102200	Weak transcription	Pancreas	Pancrea
13	chr11:19096400-19098200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:19096400-19098400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:19097000-19098000	Weak transcription	Stomach Mucosa	stomach
16	chr11:19097000-19100800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:19097000-19102400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links