Variant report

Variant	rs11024984
Chromosome Location	chr11:19108970-19108971
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19101141..19102914-chr11:19106636..19109089,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1012929	0.90[ASN][1000 genomes]
rs1039512	0.89[ASN][1000 genomes]
rs10741758	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10766526	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10766527	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10833057	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10833058	0.94[ASN][1000 genomes]
rs10833059	0.85[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs10833061	0.88[ASN][1000 genomes]
rs11024979	0.97[EUR][1000 genomes]
rs11024980	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024981	0.97[EUR][1000 genomes]
rs11024997	0.93[ASN][1000 genomes]
rs11025001	0.90[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs11025009	0.88[ASN][1000 genomes]
rs11025010	0.88[ASN][1000 genomes]
rs11025013	0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs11601935	0.88[ASN][1000 genomes]
rs11606080	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs12223197	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12223284	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs16936098	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1962511	0.90[ASN][1000 genomes]
rs2089051	0.93[ASN][1000 genomes]
rs2221350	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4756987	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4756988	0.94[ASN][1000 genomes]
rs4756989	0.85[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs4757751	0.96[ASN][1000 genomes]
rs4757753	0.90[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs60483181	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61380789	0.97[EUR][1000 genomes]
rs7125292	1.00[ASN][1000 genomes]
rs7125667	0.96[ASN][1000 genomes]
rs7125678	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs868337	0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs962317	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9633838	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19102600-19109400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:19104800-19111800	Weak transcription	Esophagus	oesophagus
3	chr11:19106800-19109200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:19108200-19113400	Enhancers	HUVEC	blood vessel
5	chr11:19108600-19110000	Enhancers	Osteobl	bone
6	chr11:19108800-19109600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:19108800-19110000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:19108800-19110000	Enhancers	Muscle Satellite Cultured Cells	--

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