Variant report

Variant	rs11025009
Chromosome Location	chr11:19122616-19122617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19121805..19124602-chr11:19137671..19139188,2	MCF-7	breast:
2	chr11:19119696..19122619-chr11:19124440..19126588,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177054	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1012929	0.98[ASN][1000 genomes]
rs1039512	0.96[ASN][1000 genomes]
rs1039513	1.00[EUR][1000 genomes]
rs10500839	1.00[EUR][1000 genomes]
rs10833057	0.93[ASN][1000 genomes]
rs10833058	0.94[ASN][1000 genomes]
rs10833059	0.97[ASN][1000 genomes]
rs10833061	1.00[ASN][1000 genomes]
rs11024984	0.88[ASN][1000 genomes]
rs11024997	0.96[ASN][1000 genomes]
rs11025000	1.00[EUR][1000 genomes]
rs11025001	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11025010	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11025012	1.00[EUR][1000 genomes]
rs11025013	0.99[ASN][1000 genomes]
rs11601935	1.00[ASN][1000 genomes]
rs11606080	1.00[ASN][1000 genomes]
rs11606142	0.81[EUR][1000 genomes]
rs12223284	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936091	0.93[EUR][1000 genomes]
rs16936105	0.97[EUR][1000 genomes]
rs1962511	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2089051	0.96[ASN][1000 genomes]
rs3893309	0.97[EUR][1000 genomes]
rs4756987	0.93[ASN][1000 genomes]
rs4756988	0.91[ASN][1000 genomes]
rs4756989	0.97[ASN][1000 genomes]
rs4757751	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4757753	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60514147	0.98[EUR][1000 genomes]
rs7125292	0.88[ASN][1000 genomes]
rs7125667	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7125678	0.93[ASN][1000 genomes]
rs73436471	0.97[EUR][1000 genomes]
rs73438344	0.85[EUR][1000 genomes]
rs73438348	0.85[EUR][1000 genomes]
rs73438350	0.81[EUR][1000 genomes]
rs868337	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9633837	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv3443532	chr11:19121763-19122626	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19116800-19123000	Weak transcription	Rectal Mucosa Donor 31	rectum

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