Variant report

Variant	rs10833061
Chromosome Location	chr11:19126858-19126859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19093222..19095138-chr11:19125990..19128293,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1012929	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1039512	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10833057	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10833058	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10833059	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10833060	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10833062	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.92[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10833063	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs11024984	0.88[ASN][1000 genomes]
rs11024997	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11025001	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11025009	1.00[ASN][1000 genomes]
rs11025010	1.00[ASN][1000 genomes]
rs11025011	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs11025013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11025014	0.85[AMR][1000 genomes]
rs11025016	0.83[AMR][1000 genomes]
rs11025017	0.83[AMR][1000 genomes]
rs11025018	0.85[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs11025020	0.83[AMR][1000 genomes]
rs11601935	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606222	0.85[AMR][1000 genomes]
rs11608243	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs12223284	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16936167	0.85[CEU][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs1962511	0.98[ASN][1000 genomes]
rs2089051	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756987	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756988	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756989	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757751	0.93[ASN][1000 genomes]
rs4757753	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4757754	0.89[AMR][1000 genomes]
rs4757755	0.89[AMR][1000 genomes]
rs7123033	0.92[CEU][hapmap];0.85[AMR][1000 genomes]
rs7125292	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7125667	0.93[ASN][1000 genomes]
rs7125678	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10833061	UEVLD	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19122800-19128000	Enhancers	Fetal Intestine Large	intestine
2	chr11:19125000-19138600	Weak transcription	Gastric	stomach
3	chr11:19126000-19127000	Enhancers	HUVEC	blood vessel
4	chr11:19126000-19127800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:19126600-19127800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:19126800-19127600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr11:19126800-19128600	Enhancers	Fetal Intestine Small	intestine

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