Variant report

Variant	rs10833062
Chromosome Location	chr11:19128052-19128053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:19127017..19129531-chr11:19138229..19140423,3	MCF-7	breast:
2	chr11:19126978..19129549-chr11:19131218..19132869,2	K562	blood:
3	chr11:19093222..19095138-chr11:19125990..19128293,2	MCF-7	breast:
4	chr11:19126978..19129301-chr11:19130674..19132718,2	K562	blood:
5	chr11:19127361..19129992-chr11:19136538..19138919,2	K562	blood:

Variant related genes	Relation type
ENSG00000177054	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1012929	0.97[EUR][1000 genomes]
rs1039512	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1039513	0.95[ASN][1000 genomes]
rs10500839	0.93[ASN][1000 genomes]
rs10833057	0.97[EUR][1000 genomes]
rs10833058	0.98[EUR][1000 genomes]
rs10833059	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10833060	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10833061	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10833063	0.84[CEU][hapmap]
rs11024997	0.98[EUR][1000 genomes]
rs11025000	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11025011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11025012	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs11025013	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11025018	0.85[TSI][hapmap]
rs11601935	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs11606080	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11608243	0.85[CEU][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes]
rs16936091	0.81[CHD][hapmap]
rs16936105	0.86[CHD][hapmap]
rs16936167	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs2089051	0.98[EUR][1000 genomes]
rs4756987	0.97[EUR][1000 genomes]
rs4756988	0.97[EUR][1000 genomes]
rs4756989	1.00[CEU][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];1.00[EUR][1000 genomes]
rs60514147	1.00[ASN][1000 genomes]
rs68006237	0.82[AMR][1000 genomes]
rs7123033	0.92[CEU][hapmap]
rs7125292	0.89[EUR][1000 genomes]
rs7125678	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10833062	UEVLD	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19125000-19138600	Weak transcription	Gastric	stomach
2	chr11:19126800-19128600	Enhancers	Fetal Intestine Small	intestine
3	chr11:19127000-19128800	Weak transcription	HUVEC	blood vessel
4	chr11:19127800-19129400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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