Variant report

Variant	rs10833058
Chromosome Location	chr11:19112205-19112206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1012929	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1039512	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10833057	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10833059	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10833060	0.99[EUR][1000 genomes]
rs10833061	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10833062	0.98[EUR][1000 genomes]
rs10833063	0.83[AMR][1000 genomes]
rs11024984	0.94[ASN][1000 genomes]
rs11024997	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11025001	0.96[ASN][1000 genomes]
rs11025009	0.94[ASN][1000 genomes]
rs11025010	0.94[ASN][1000 genomes]
rs11025011	0.98[EUR][1000 genomes]
rs11025013	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11025014	0.85[AMR][1000 genomes]
rs11025016	0.83[AMR][1000 genomes]
rs11025017	0.83[AMR][1000 genomes]
rs11025018	0.83[AMR][1000 genomes]
rs11025020	0.83[AMR][1000 genomes]
rs11601935	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11606080	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11606222	0.85[AMR][1000 genomes]
rs12223284	0.94[ASN][1000 genomes]
rs16936167	0.83[AMR][1000 genomes]
rs1962511	0.96[ASN][1000 genomes]
rs2089051	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756987	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756988	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756989	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757751	0.98[ASN][1000 genomes]
rs4757753	0.96[ASN][1000 genomes]
rs7123033	0.85[AMR][1000 genomes]
rs7125292	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7125667	0.98[ASN][1000 genomes]
rs7125678	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs962317	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19108200-19113400	Enhancers	HUVEC	blood vessel
2	chr11:19110000-19115400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:19110400-19112800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:19111800-19112600	Enhancers	Esophagus	oesophagus
5	chr11:19112000-19112400	Enhancers	NH-A	brain
6	chr11:19112000-19112800	Weak transcription	NHEK	skin
7	chr11:19112000-19115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:19112200-19115000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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