Variant report

Variant	rs7125292
Chromosome Location	chr11:19109241-19109242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1012929	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1039512	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10741758	0.82[ASN][1000 genomes]
rs10766526	0.82[ASN][1000 genomes]
rs10766527	0.82[ASN][1000 genomes]
rs10833057	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10833058	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10833059	0.85[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10833060	0.91[EUR][1000 genomes]
rs10833061	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10833062	0.89[EUR][1000 genomes]
rs11024980	0.84[ASN][1000 genomes]
rs11024984	1.00[ASN][1000 genomes]
rs11024997	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11025000	1.00[CEU][hapmap]
rs11025001	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11025009	0.88[ASN][1000 genomes]
rs11025010	0.88[ASN][1000 genomes]
rs11025011	0.89[EUR][1000 genomes]
rs11025012	0.85[CEU][hapmap]
rs11025013	0.90[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11601935	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11606080	0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11606142	0.82[CEU][hapmap]
rs12223197	0.83[ASN][1000 genomes]
rs12223284	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs16936091	0.82[CEU][hapmap]
rs16936105	1.00[CEU][hapmap]
rs1962511	0.90[ASN][1000 genomes]
rs2089051	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2221350	0.84[ASN][1000 genomes]
rs3893309	0.85[CEU][hapmap]
rs4756987	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756988	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756989	0.85[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4757751	0.96[ASN][1000 genomes]
rs4757753	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7125667	0.96[ASN][1000 genomes]
rs7125678	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs868337	0.85[CEU][hapmap];0.82[ASN][1000 genomes]
rs962317	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19102600-19109400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:19104800-19111800	Weak transcription	Esophagus	oesophagus
3	chr11:19108200-19113400	Enhancers	HUVEC	blood vessel
4	chr11:19108600-19110000	Enhancers	Osteobl	bone
5	chr11:19108800-19109600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:19108800-19110000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:19108800-19110000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:19109000-19110000	Enhancers	NH-A	brain
9	chr11:19109200-19109800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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