Variant report

Variant	rs868337
Chromosome Location	chr11:19101491-19101492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:19101141..19102914-chr11:19106636..19109089,2	MCF-7	breast:
2	chr11:19101207..19103376-chr11:19137461..19139475,2	MCF-7	breast:
3	chr11:19100832..19103167-chr11:19106343..19107943,2	K562	blood:

Variant related genes	Relation type
ENSG00000177054	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1039513	0.97[EUR][1000 genomes]
rs10500839	0.97[EUR][1000 genomes]
rs10741758	1.00[ASN][1000 genomes]
rs10766526	1.00[ASN][1000 genomes]
rs10766527	1.00[ASN][1000 genomes]
rs11024980	0.98[ASN][1000 genomes]
rs11024984	0.82[ASN][1000 genomes]
rs11025000	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs11025001	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11025009	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11025010	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11025012	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs12223197	0.99[ASN][1000 genomes]
rs12223284	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16936091	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs16936098	0.90[ASN][1000 genomes]
rs16936105	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1962511	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2221350	0.98[ASN][1000 genomes]
rs3893309	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4757751	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4757753	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs60483181	0.90[ASN][1000 genomes]
rs60514147	0.95[EUR][1000 genomes]
rs7125292	0.82[ASN][1000 genomes]
rs7125667	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436471	1.00[EUR][1000 genomes]
rs73438344	0.83[EUR][1000 genomes]
rs73438348	0.83[EUR][1000 genomes]
rs962317	0.94[ASN][1000 genomes]
rs9633837	0.87[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv897030	chr11:19049478-19106045	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19095200-19104000	Weak transcription	Esophagus	oesophagus
2	chr11:19096200-19102200	Weak transcription	Pancreas	Pancrea
3	chr11:19097000-19102400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:19098200-19103600	Enhancers	HUVEC	blood vessel
5	chr11:19098800-19102800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:19099000-19102400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:19099000-19102800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:19099200-19102000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:19099400-19102800	Enhancers	NHDF-Ad	bronchial
10	chr11:19100400-19102600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:19100600-19102000	Weak transcription	Fetal Heart	heart
12	chr11:19100600-19102800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:19100600-19102800	Enhancers	Osteobl	bone
14	chr11:19100600-19103000	Enhancers	NHEK	skin
15	chr11:19100800-19101600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:19100800-19101600	Enhancers	Hela-S3	cervix
17	chr11:19100800-19102000	Enhancers	NHLF	lung
18	chr11:19100800-19102400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:19100800-19102400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:19100800-19102400	Enhancers	HSMM	muscle
21	chr11:19100800-19102400	Enhancers	NH-A	brain
22	chr11:19100800-19102600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:19100800-19102600	Enhancers	HMEC	breast
24	chr11:19100800-19102800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:19100800-19103000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr11:19101000-19101600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr11:19101000-19101800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:19101000-19101800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:19101000-19101800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:19101000-19102200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr11:19101000-19102400	Enhancers	Placenta Amnion	Placenta Amnion
32	chr11:19101000-19102800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:19101200-19101800	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:19101200-19102000	Weak transcription	Brain Anterior Caudate	brain

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