Variant report

Variant	rs10500839
Chromosome Location	chr11:19113320-19113321
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1039513	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10833060	0.93[ASN][1000 genomes]
rs10833062	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11025000	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11025001	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11025009	1.00[EUR][1000 genomes]
rs11025010	1.00[EUR][1000 genomes]
rs11025011	0.93[ASN][1000 genomes]
rs11025012	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11606142	0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs12223284	0.82[CEU][hapmap];1.00[EUR][1000 genomes]
rs16936091	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.93[EUR][1000 genomes]
rs16936105	0.82[CEU][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];0.97[EUR][1000 genomes]
rs1962511	1.00[EUR][1000 genomes]
rs3893309	0.82[CEU][hapmap];0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4757751	0.97[EUR][1000 genomes]
rs4757753	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs60514147	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7125667	0.97[EUR][1000 genomes]
rs73436471	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73438344	0.85[EUR][1000 genomes]
rs73438348	0.85[EUR][1000 genomes]
rs73438350	0.81[EUR][1000 genomes]
rs868337	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs9633837	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19108200-19113400	Enhancers	HUVEC	blood vessel
2	chr11:19110000-19115400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:19112000-19115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:19112200-19115000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:19112400-19115200	Weak transcription	NH-A	brain
6	chr11:19112800-19115200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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