Variant report

Variant	rs16936091
Chromosome Location	chr11:19094723-19094724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:19094423..19096324-chr11:19165752..19167827,2	MCF-7	breast:
2	chr11:19092484..19094846-chr11:19096156..19098835,2	MCF-7	breast:
3	chr11:19093295..19097207-chr11:19260781..19264758,3	K562	blood:
4	chr11:19093222..19095138-chr11:19125990..19128293,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129173	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1039513	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10500839	0.93[EUR][1000 genomes]
rs10833062	0.81[CHD][hapmap]
rs11024979	0.82[ASN][1000 genomes]
rs11024981	0.82[ASN][1000 genomes]
rs11025000	0.93[EUR][1000 genomes]
rs11025001	0.87[GIH][hapmap];0.88[MEX][hapmap];0.93[EUR][1000 genomes]
rs11025009	0.93[EUR][1000 genomes]
rs11025010	0.93[EUR][1000 genomes]
rs11025012	0.93[EUR][1000 genomes]
rs12223284	0.93[EUR][1000 genomes]
rs16936105	0.85[CEU][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1962511	0.93[EUR][1000 genomes]
rs3893309	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4757751	0.95[EUR][1000 genomes]
rs4757753	0.87[GIH][hapmap];0.88[MEX][hapmap];0.93[EUR][1000 genomes]
rs60514147	0.90[EUR][1000 genomes]
rs61380789	0.84[ASN][1000 genomes]
rs7125667	0.95[EUR][1000 genomes]
rs73436471	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs868337	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs9633837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9633838	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv897030	chr11:19049478-19106045	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19093000-19095800	Enhancers	Rectal Mucosa Donor 29	rectum
2	chr11:19093000-19095800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:19093200-19094800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:19093200-19095000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:19093200-19095000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:19093200-19095200	Enhancers	Colonic Mucosa	Colon
7	chr11:19093200-19095200	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:19093200-19095400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:19093200-19096200	Enhancers	Gastric	stomach
10	chr11:19093400-19094800	Weak transcription	Adipose Nuclei	Adipose
11	chr11:19093400-19095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:19093400-19095000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:19093400-19097000	Enhancers	Stomach Mucosa	stomach
14	chr11:19093400-19098200	Weak transcription	HUVEC	blood vessel
15	chr11:19093400-19098800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:19093600-19094800	Weak transcription	K562	blood
17	chr11:19093600-19095200	Enhancers	Esophagus	oesophagus
18	chr11:19093600-19098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:19094000-19096200	Enhancers	Pancreas	Pancrea
20	chr11:19094200-19095800	Enhancers	Fetal Intestine Small	intestine
21	chr11:19094200-19096400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:19094400-19095000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:19094600-19095000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:19094600-19095000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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