Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:19096399..19098941-chr11:19128925..19131186,2	MCF-7	breast:
2	chr11:19127017..19129531-chr11:19138229..19140423,3	MCF-7	breast:
3	chr11:19126978..19129549-chr11:19131218..19132869,2	K562	blood:
4	chr11:19126978..19129301-chr11:19130674..19132718,2	K562	blood:
5	chr11:19127361..19129992-chr11:19136538..19138919,2	K562	blood:

Variant related genes	Relation type
ENSG00000177054	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1039513	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10500839	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10833060	1.00[ASN][1000 genomes]
rs10833062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs11025000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11025001	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11025009	1.00[EUR][1000 genomes]
rs11025010	1.00[EUR][1000 genomes]
rs11025011	1.00[ASN][1000 genomes]
rs11606142	0.81[EUR][1000 genomes]
rs12223284	0.82[CEU][hapmap];1.00[EUR][1000 genomes]
rs16936091	0.93[EUR][1000 genomes]
rs16936105	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs1962511	1.00[EUR][1000 genomes]
rs3893309	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs4757751	0.97[EUR][1000 genomes]
rs4757753	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs60514147	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125667	0.97[EUR][1000 genomes]
rs73436471	0.97[EUR][1000 genomes]
rs73438344	0.85[EUR][1000 genomes]
rs73438348	0.85[EUR][1000 genomes]
rs73438350	0.81[EUR][1000 genomes]
rs868337	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs9633837	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19125000-19138600	Weak transcription	Gastric	stomach
2	chr11:19127800-19129400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:19128800-19130000	Enhancers	HUVEC	blood vessel

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