Variant report
| Variant | rs11025000 |
|---|---|
| Chromosome Location | chr11:19117778-19117779 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:19117077..19119112-chr11:19137437..19139038,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000177054 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1039513 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10500839 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10833060 | 0.97[ASN][1000 genomes] |
| rs10833062 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11025001 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs11025009 | 1.00[EUR][1000 genomes] |
| rs11025010 | 1.00[EUR][1000 genomes] |
| rs11025011 | 0.97[ASN][1000 genomes] |
| rs11025012 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11606142 | 0.81[EUR][1000 genomes] |
| rs12223284 | 0.82[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs16936091 | 0.93[EUR][1000 genomes] |
| rs16936105 | 0.82[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs1962511 | 1.00[EUR][1000 genomes] |
| rs3893309 | 0.82[CEU][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4757751 | 0.97[EUR][1000 genomes] |
| rs4757753 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs60514147 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7125667 | 0.97[EUR][1000 genomes] |
| rs73436471 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73438344 | 0.85[EUR][1000 genomes] |
| rs73438348 | 0.85[EUR][1000 genomes] |
| rs73438350 | 0.81[EUR][1000 genomes] |
| rs868337 | 0.82[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs9633837 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040805 | chr11:19037871-19892803 | Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv540957 | chr11:19037871-19892803 | Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:19116000-19119000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr11:19116800-19123000 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
