Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19118812..19121642-chr11:19124277..19126198,2	K562	blood:
2	chr11:19119696..19122619-chr11:19124440..19126588,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10500839	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10833060	0.95[ASN][1000 genomes]
rs10833062	0.95[ASN][1000 genomes]
rs11025000	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11025001	1.00[EUR][1000 genomes]
rs11025009	1.00[EUR][1000 genomes]
rs11025010	1.00[EUR][1000 genomes]
rs11025011	0.95[ASN][1000 genomes]
rs11025012	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11606142	0.81[EUR][1000 genomes]
rs12223284	1.00[EUR][1000 genomes]
rs16936091	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16936105	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1962511	1.00[EUR][1000 genomes]
rs3893309	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4757751	0.97[EUR][1000 genomes]
rs4757753	1.00[EUR][1000 genomes]
rs60514147	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7125667	0.97[EUR][1000 genomes]
rs73436471	0.97[EUR][1000 genomes]
rs73438344	0.85[EUR][1000 genomes]
rs73438348	0.85[EUR][1000 genomes]
rs73438350	0.81[EUR][1000 genomes]
rs868337	0.97[EUR][1000 genomes]
rs9633837	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19116800-19123000	Weak transcription	Rectal Mucosa Donor 31	rectum

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