Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19101207..19103376-chr11:19137461..19139475,2	MCF-7	breast:
2	chr11:19100832..19103167-chr11:19106343..19107943,2	K562	blood:

Variant related genes	Relation type
ENSG00000177054	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1039513	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10500839	0.97[EUR][1000 genomes]
rs10833062	0.86[CHD][hapmap]
rs11024979	0.98[ASN][1000 genomes]
rs11024981	0.98[ASN][1000 genomes]
rs11025000	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs11025001	0.82[CEU][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.97[EUR][1000 genomes]
rs11025009	0.97[EUR][1000 genomes]
rs11025010	0.97[EUR][1000 genomes]
rs11025012	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs12223284	0.97[EUR][1000 genomes]
rs16936091	0.85[CEU][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1962511	0.97[EUR][1000 genomes]
rs3893309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757751	1.00[EUR][1000 genomes]
rs4757753	0.82[CEU][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.97[EUR][1000 genomes]
rs60514147	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61380789	1.00[ASN][1000 genomes]
rs7125667	1.00[EUR][1000 genomes]
rs73436471	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73438344	0.83[EUR][1000 genomes]
rs73438348	0.83[EUR][1000 genomes]
rs868337	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9633837	0.85[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9633838	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv897030	chr11:19049478-19106045	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19095200-19104000	Weak transcription	Esophagus	oesophagus
2	chr11:19098200-19103600	Enhancers	HUVEC	blood vessel
3	chr11:19100600-19103000	Enhancers	NHEK	skin
4	chr11:19100800-19103000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:19102200-19103000	Enhancers	Pancreas	Pancrea
6	chr11:19102400-19106000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:19102400-19106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:19102600-19109400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:19102800-19103600	Weak transcription	NHDF-Ad	bronchial
10	chr11:19102800-19103800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:19102800-19106400	Weak transcription	Osteobl	bone

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