Variant report

Variant	rs11601935
Chromosome Location	chr11:19124905-19124906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:19123439..19125128-chr11:19261642..19264317,2	MCF-7	breast:
2	chr11:19118812..19121642-chr11:19124277..19126198,2	K562	blood:
3	chr11:19119696..19122619-chr11:19124440..19126588,2	MCF-7	breast:
4	chr11:19124492..19126550-chr11:19131420..19133331,2	K562	blood:
5	chr11:19098962..19100947-chr11:19123727..19125243,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129173	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1012929	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1039512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10833057	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10833058	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10833059	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10833060	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10833061	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10833062	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10833063	0.83[AMR][1000 genomes]
rs11024984	0.88[ASN][1000 genomes]
rs11024997	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11025001	0.98[ASN][1000 genomes]
rs11025009	1.00[ASN][1000 genomes]
rs11025010	1.00[ASN][1000 genomes]
rs11025011	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs11025013	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11025014	0.85[AMR][1000 genomes]
rs11025016	0.83[AMR][1000 genomes]
rs11025017	0.83[AMR][1000 genomes]
rs11025018	0.83[AMR][1000 genomes]
rs11025020	0.83[AMR][1000 genomes]
rs11606080	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606222	0.85[AMR][1000 genomes]
rs12223284	1.00[ASN][1000 genomes]
rs16936167	0.83[AMR][1000 genomes]
rs1962511	0.98[ASN][1000 genomes]
rs2089051	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756987	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756988	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756989	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757751	0.93[ASN][1000 genomes]
rs4757753	0.98[ASN][1000 genomes]
rs4757754	0.89[AMR][1000 genomes]
rs4757755	0.89[AMR][1000 genomes]
rs7123033	0.85[AMR][1000 genomes]
rs7125292	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7125667	0.93[ASN][1000 genomes]
rs7125678	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19122800-19125400	Enhancers	Fetal Intestine Small	intestine
2	chr11:19122800-19128000	Enhancers	Fetal Intestine Large	intestine
3	chr11:19123000-19126400	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:19124000-19125000	Enhancers	Gastric	stomach
5	chr11:19124000-19125000	Enhancers	Pancreas	Pancrea
6	chr11:19124000-19125000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr11:19124000-19125200	Enhancers	Colonic Mucosa	Colon
8	chr11:19124200-19125200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr11:19124400-19126000	Weak transcription	HUVEC	blood vessel
10	chr11:19124800-19126000	Enhancers	Small Intestine	intestine
11	chr11:19124800-19126200	Weak transcription	Rectal Mucosa Donor 31	rectum

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