Variant report

Variant	rs11025017
Chromosome Location	chr11:19136734-19136735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1039512	0.83[AMR][1000 genomes]
rs10833057	0.81[AMR][1000 genomes]
rs10833058	0.83[AMR][1000 genomes]
rs10833059	0.88[AMR][1000 genomes]
rs10833061	0.83[AMR][1000 genomes]
rs10833063	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024997	0.88[AMR][1000 genomes]
rs11025013	0.88[AMR][1000 genomes]
rs11025014	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11025016	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11025018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11025020	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11601935	0.83[AMR][1000 genomes]
rs11601953	0.97[EUR][1000 genomes]
rs11606222	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11608243	1.00[EUR][1000 genomes]
rs16936167	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2089051	0.88[AMR][1000 genomes]
rs4756987	0.81[AMR][1000 genomes]
rs4756989	0.86[AMR][1000 genomes]
rs4757754	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757755	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68006237	1.00[EUR][1000 genomes]
rs7123033	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19125000-19138600	Weak transcription	Gastric	stomach
2	chr11:19131600-19138000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:19131600-19138000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:19132000-19138000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:19132200-19138000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:19132400-19137800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:19132800-19138000	Weak transcription	Pancreas	Pancrea
8	chr11:19133400-19137800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:19133400-19138000	Weak transcription	Fetal Brain Female	brain
10	chr11:19133400-19138000	Weak transcription	Fetal Heart	heart
11	chr11:19133600-19138000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:19134200-19138200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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