Variant report

Variant	rs6049719
Chromosome Location	chr20:24462077-24462078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24461646..24463186-chr20:24463669..24465264,2	MCF-7	breast:
2	chr20:24448972..24451523-chr20:24462045..24463814,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101463	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11908507	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326304	1.00[EUR][1000 genomes]
rs6036815	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049723	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049724	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049726	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049728	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6106889	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114736	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7267072	1.00[EUR][1000 genomes]
rs73901847	1.00[EUR][1000 genomes]
rs745979	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24452400-24463800	Weak transcription	Right Ventricle	heart
2	chr20:24457400-24462400	Enhancers	Fetal Heart	heart
3	chr20:24457600-24470600	Weak transcription	Fetal Brain Female	brain
4	chr20:24459400-24471000	Weak transcription	Fetal Muscle Leg	muscle
5	chr20:24459400-24471800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr20:24459600-24465000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr20:24459600-24472000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:24460200-24468800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr20:24460200-24469600	Weak transcription	Brain Anterior Caudate	brain
10	chr20:24460200-24471400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr20:24460200-24472600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr20:24460400-24468200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr20:24460400-24468600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr20:24460400-24469600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr20:24460600-24464200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr20:24460800-24464200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:24460800-24464200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr20:24460800-24468400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr20:24460800-24469800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr20:24460800-24483800	Weak transcription	Aorta	Aorta
21	chr20:24461400-24462200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr20:24461400-24462400	Enhancers	Fetal Kidney	kidney
23	chr20:24461400-24463800	Weak transcription	Brain Hippocampus Middle	brain
24	chr20:24461400-24468200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr20:24461400-24469800	Weak transcription	Fetal Brain Male	brain
26	chr20:24461600-24468000	Weak transcription	Brain Angular Gyrus	brain
27	chr20:24461800-24462400	Enhancers	Left Ventricle	heart
28	chr20:24461800-24468600	Weak transcription	Brain Substantia Nigra	brain
29	chr20:24462000-24462200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr20:24462000-24462400	Enhancers	Right Atrium	heart

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