Variant report

Variant	rs6114736
Chromosome Location	chr20:24453713-24453714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11908507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326304	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6036815	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049719	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6106889	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7267072	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73901847	1.00[EUR][1000 genomes]
rs745979	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24452000-24454000	Weak transcription	Spleen	Spleen
2	chr20:24452200-24454200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24452200-24454600	Enhancers	Brain Substantia Nigra	brain
4	chr20:24452200-24454600	Enhancers	Fetal Heart	heart
5	chr20:24452400-24453800	Weak transcription	NH-A	brain
6	chr20:24452400-24455800	Weak transcription	HMEC	breast
7	chr20:24452400-24458400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:24452400-24458600	Weak transcription	Right Atrium	heart
9	chr20:24452400-24463800	Weak transcription	Right Ventricle	heart
10	chr20:24452600-24454000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:24452600-24454400	Enhancers	Brain Anterior Caudate	brain
12	chr20:24452600-24454800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr20:24452600-24459400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr20:24452600-24459400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr20:24452800-24453800	Enhancers	Brain Cingulate Gyrus	brain
16	chr20:24453000-24454200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr20:24453000-24454400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr20:24453200-24454200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr20:24453200-24454200	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr20:24453200-24454600	Enhancers	Left Ventricle	heart
21	chr20:24453200-24455400	Enhancers	Brain Angular Gyrus	brain
22	chr20:24453400-24455800	Weak transcription	Brain Germinal Matrix	brain
23	chr20:24453600-24454200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
24	chr20:24453600-24454200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
25	chr20:24453600-24454400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr20:24453600-24454800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
27	chr20:24453600-24459000	Weak transcription	Fetal Brain Male	brain

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