Variant report

Variant	rs6106889
Chromosome Location	chr20:24456187-24456188
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11908507	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326304	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6036815	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049719	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049723	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049724	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049726	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049728	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6114736	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7267072	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73901847	1.00[EUR][1000 genomes]
rs745979	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24452400-24458400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24452400-24458600	Weak transcription	Right Atrium	heart
3	chr20:24452400-24463800	Weak transcription	Right Ventricle	heart
4	chr20:24452600-24459400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:24452600-24459400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr20:24453600-24459000	Weak transcription	Fetal Brain Male	brain
7	chr20:24454000-24456400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:24454400-24457600	Weak transcription	Brain Anterior Caudate	brain
9	chr20:24454400-24459000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:24454600-24457400	Weak transcription	Fetal Heart	heart
11	chr20:24454600-24457800	Weak transcription	Left Ventricle	heart
12	chr20:24454800-24459200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr20:24455400-24456200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr20:24455600-24456600	Enhancers	Brain Cingulate Gyrus	brain
15	chr20:24455800-24456200	Enhancers	Brain Substantia Nigra	brain
16	chr20:24455800-24456400	Enhancers	Brain Angular Gyrus	brain
17	chr20:24455800-24456400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr20:24455800-24456400	Enhancers	HMEC	breast
19	chr20:24455800-24456600	Enhancers	Fetal Thymus	thymus
20	chr20:24455800-24456800	Enhancers	Brain Hippocampus Middle	brain
21	chr20:24456000-24456200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr20:24456000-24456200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr20:24456000-24456200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr20:24456000-24456400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr20:24456000-24456400	Enhancers	NHEK	skin

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