Variant report

Variant	rs6049833
Chromosome Location	chr20:24635725-24635726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24631593..24633850-chr20:24634510..24636557,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6049828	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6049829	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6049834	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049835	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761438	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv912824	chr20:24612808-24639916	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24616200-24639600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr20:24620000-24641200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24629200-24642600	Weak transcription	Right Atrium	heart
4	chr20:24629400-24641000	Weak transcription	Right Ventricle	heart
5	chr20:24630800-24638600	Weak transcription	Brain Substantia Nigra	brain
6	chr20:24631000-24639600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr20:24631000-24639800	Weak transcription	Brain Angular Gyrus	brain
8	chr20:24631200-24639600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr20:24631600-24637400	Weak transcription	Ovary	ovary
10	chr20:24633200-24635800	Enhancers	Stomach Mucosa	stomach
11	chr20:24633400-24638600	Weak transcription	Brain Hippocampus Middle	brain
12	chr20:24633600-24637400	Weak transcription	Fetal Muscle Leg	muscle
13	chr20:24634000-24636600	Weak transcription	Spleen	Spleen
14	chr20:24634000-24637600	Weak transcription	Fetal Kidney	kidney
15	chr20:24634400-24637400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr20:24634600-24637000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr20:24634600-24637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr20:24634600-24637200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr20:24634600-24637600	Weak transcription	NH-A	brain
20	chr20:24634600-24638000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr20:24634600-24648800	Weak transcription	Gastric	stomach
22	chr20:24634800-24637800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr20:24635000-24637600	Weak transcription	Osteobl	bone
24	chr20:24635200-24638000	Weak transcription	A549	lung
25	chr20:24635400-24637200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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