Variant report

Variant	rs60501442
Chromosome Location	chr11:76621485-76621486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55703321	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55704636	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56366003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56690742	1.00[AMR][1000 genomes]
rs57689898	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59296116	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59877692	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61000315	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61056520	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61086262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61665044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7113632	1.00[AMR][1000 genomes]
rs73493631	1.00[AMR][1000 genomes]
rs7941242	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942088	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942185	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:76608800-76622600	Weak transcription	Left Ventricle	heart
3	chr11:76613600-76631200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:76613800-76622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:76613800-76622600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:76615600-76622200	Weak transcription	Small Intestine	intestine
7	chr11:76615600-76631200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:76617600-76622400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:76617800-76621600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:76617800-76622000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:76617800-76630000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:76617800-76630000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:76618200-76637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:76618600-76629800	Weak transcription	A549	lung
15	chr11:76618600-76630000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:76621400-76621800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:76621400-76624200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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